For easy removal, place the whole cloves and whole allspice berries in a double-layered square of cheesecloth. Tie with kitchen twine to make a spice sachet.
Pour the apple cider, orange juice, cranberry juice, and pineapple juice in a large pot, then add the brown sugar and spice sachet. Cover and bring the mixture to a boil.
While the pot is coming to a boil, peel the ginger root by scraping it with the edge of a spoon and slice it into thin coins. Score the lemons and oranges in four to six sections, then peel, reserving the fruit for another use. Slice the peels into ¼ or ⅛-inch strips. Squeeze the juice from 2 large room temperature lemons.
Once the juice comes to a boil, turn the heat down to medium low. Stir in the ginger root, citrus peels, lemon juice, and cinnamon sticks. Cover and simmer for one hour.
Remove the spice sachet and cinnamon sticks, as the flavor will be too strong if you leave them in for too long. (If you didn't use a spice sachet, just pour the wassail through a sieve set over a very large bowl.) Add the citrus peels back to the wassail for color and flavor, and discard the spice sachet and cinnamon sticks.
If desired, garnish each cup with a half a slice of orange and a few whole cloves. Serve hot.